差异的甲基化
差异的甲基化位点位于基因的prometer区域,我们才去保留,主要包括(TSS200和TSS1500)
注释文件来自ChAMP工具包,data一下即可
一般的差异定义标准为
参考文献:Immune Signature-Based Subtypes of Cervical Squamous Cell Carcinoma Tightly Associated with
Human Papillomavirus Type 16 Expression, Molecular Features, and Clinical Outcome
差异标准提高:
参考文献:Epigenetic age acceleration of cervical squamous cell carcinoma converged to human papillomavirus 16/18 expression, immunoactivation, and favourable prognosis
promoter regions 默认(TSS200和TSS1500)
参考文献:The signature of HBV-related liver disease in peripheral blood mononuclear cell DNA methylation